Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3663
Gene Symbol: IRF5
IRF5
0.500 AlteredExpression disease BEFREE Taken together, our results uncovered a mechanistic insight of a noncoding functional variant acting as an allele-specific distal enhancer to directly modulate IRF5 expression, which might obligate in understanding of complex genetic architectures of SLE and SSc pathogenesis. 31421124 2020
Entrez Id: 23534
Gene Symbol: TNPO3
TNPO3
0.110 GeneticVariation disease BEFREE Through a series of bioinformatics and functional analyses, we prioritized a potential independent functional single-nucleotide polymorphism (rs13239597) within TNPO3 promoter region, residing in a putative enhancer element and validated that IRF5 is the distal target gene (∼118 kb) of rs13239597, which is a key regulator involved in pathogenic autoantibody dysregulation, increasing risk of both SLE and SSc. 31421124 2020
Entrez Id: 1636
Gene Symbol: ACE
ACE
0.100 Biomarker disease BEFREE Based on regular followup data from the German Network for Systemic Scleroderma, we used univariate and multivariate generalized estimating equations to analyze the association between clinical variables, SSc subsets, therapy [i.e., angiotensin-converting enzyme inhibitors (ACEi), corticosteroids], and the occurrence of SRC. 30936287 2020
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.100 Biomarker disease BEFREE Keratinocyte-conditioned media of resting, IL-17A-, and/or transforming growth factor-β-primed primary keratinocytes were used to stimulate healthy donors and scleroderma fibroblasts. 31276679 2020
Entrez Id: 49
Gene Symbol: ACR
ACR
0.100 Biomarker disease BEFREE The diagnosis of SSc was established in patients who met EULAR/ACR 2013 classification criteria. 31746507 2020
Entrez Id: 49
Gene Symbol: ACR
ACR
0.100 Biomarker disease BEFREE patients fulfilling the ACR/EULAR classification criteria for SSc were prospectively included between 2014 and 2016. 31301817 2020
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.100 AlteredExpression disease BEFREE Thal treatment: (a) reduced skin, and pulmonary tissue fibrosis, inflammation score, and hydroxyproline content (P < .001) in BLM-induced SSc mice; (b) reduced the percentages of Th17 cells and associated interleukin (IL)-17A expression (both P < .05) but increased the percentages of Treg cells and its transcription factor Foxp3 expression (both P < .05); (c) correlation analysis found positive correlations between Th17/Treg ratio, the inflammatory score of the skin and pulmonary tissues, hydroxyproline content, and type I collagen messenger RNA expression (r = .8546, .8656, .6902, .6807, .8118, and .8424, respectively, P < .01); (d) Thal inhibited TGF-β1 expression and Smad3 phosphorylation (both P < .05); (e) TGF-β1 was positively correlated with the IL-17A and Th17/Treg ratio (r = .5856, P = .005; r = .6684, P = .0107, respectively). 31840939 2020
Entrez Id: 3565
Gene Symbol: IL4
IL4
0.100 Biomarker disease BEFREE Interleukin-4 and interleukin-13 as possible therapeutic targets in systemic sclerosis. 31400638 2020
Entrez Id: 3596
Gene Symbol: IL13
IL13
0.100 Biomarker disease BEFREE Interleukin-4 and interleukin-13 as possible therapeutic targets in systemic sclerosis. 31400638 2020
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.100 Biomarker disease BEFREE In multiple logistic regression, only the NLR (regression coefficient = 3.49, p = 0.031) and CRP (regression coefficient = 0.17, p = 0.037) remained significantly different between SSc and healthy control groups (Cox and Snell R<sup>2</sup> = 0.243, Nagelkerke R<sup>2</sup> = 0.337, p < 0.001). 31317426 2020
Entrez Id: 4088
Gene Symbol: SMAD3
SMAD3
0.100 AlteredExpression disease BEFREE Thal treatment: (a) reduced skin, and pulmonary tissue fibrosis, inflammation score, and hydroxyproline content (P < .001) in BLM-induced SSc mice; (b) reduced the percentages of Th17 cells and associated interleukin (IL)-17A expression (both P < .05) but increased the percentages of Treg cells and its transcription factor Foxp3 expression (both P < .05); (c) correlation analysis found positive correlations between Th17/Treg ratio, the inflammatory score of the skin and pulmonary tissues, hydroxyproline content, and type I collagen messenger RNA expression (r = .8546, .8656, .6902, .6807, .8118, and .8424, respectively, P < .01); (d) Thal inhibited TGF-β1 expression and Smad3 phosphorylation (both P < .05); (e) TGF-β1 was positively correlated with the IL-17A and Th17/Treg ratio (r = .5856, P = .005; r = .6684, P = .0107, respectively). 31840939 2020
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.100 Biomarker disease BEFREE Thal can effectively prevent skin and pulmonary tissue fibrosis in a mouse model of SSc through the TGF-β1/Smad3 signaling pathway and can rectify the distortion of the Th17/Treg balance in SSc by potentially regulating Th17 and Treg cell production, as well as their related factors expression. 31840939 2020
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.090 AlteredExpression disease BEFREE Thal treatment: (a) reduced skin, and pulmonary tissue fibrosis, inflammation score, and hydroxyproline content (P < .001) in BLM-induced SSc mice; (b) reduced the percentages of Th17 cells and associated interleukin (IL)-17A expression (both P < .05) but increased the percentages of Treg cells and its transcription factor Foxp3 expression (both P < .05); (c) correlation analysis found positive correlations between Th17/Treg ratio, the inflammatory score of the skin and pulmonary tissues, hydroxyproline content, and type I collagen messenger RNA expression (r = .8546, .8656, .6902, .6807, .8118, and .8424, respectively, P < .01); (d) Thal inhibited TGF-β1 expression and Smad3 phosphorylation (both P < .05); (e) TGF-β1 was positively correlated with the IL-17A and Th17/Treg ratio (r = .5856, P = .005; r = .6684, P = .0107, respectively). 31840939 2020
Entrez Id: 5196
Gene Symbol: PF4
PF4
0.080 Biomarker disease BEFREE Levels of IL-4, IL-13 and CXCL4 are higher in the serum of SSc patients compared to healthy controls. 31400638 2020
Entrez Id: 183
Gene Symbol: AGT
AGT
0.050 AlteredExpression disease BEFREE Previously, disturbances in plasma levels of angiotensin II (Ang II) and its antagonistic angiotensin-(1-7) (Ang-(1-7)) were found in patients with SSc. 31746507 2020
Entrez Id: 355
Gene Symbol: FAS
FAS
0.050 GeneticVariation disease BEFREE Our meta-analysis showed that the FAS -670 A/G polymorphism was associated with the risk of autoimmune diseases (GG vs. GA: OR=1.079, 95% CI=1.004-1.160, P=0.038), especially in Caucasians (GG vs. GA: OR=1.12, 95% CI=1.03-1.23, P=0.012), Asians (G vs. A: OR=0.89, 95% CI=0.83-0.96, P=0.002), systemic lupus erythematosus (SLE) (G vs. A: OR=0.85, 95% CI=0.77-0.94, P=0.001), multiple sclerosis (MS) (GG+GA vs. AA: OR=0.83, 95% CI=0.70-0.99, P=0.043), systemic sclerosis (SSc) (GG vs. GA: OR=1.20, 95% CI=1.07-1.36, P=0.003) and Hashimoto's thyroiditis (HT) (G vs. A: OR=1.45, 95% CI=1.10-1.90, P=0.008); the FAS -1377 G/A polymorphism was associated with the risk of autoimmune diseases (A vs. G: OR=1.11, 95% CI=1.03-1.20, P=0.008), especially in Asians (A vs. G: OR=1.15, 95% CI=1.05-1.25, P=0.002) and high quality studies (A vs. G: OR=1.14, 95% CI=1.05-1.24, P=0.002). 31840751 2020
Entrez Id: 140805
Gene Symbol: HT
HT
0.040 GeneticVariation disease BEFREE Our meta-analysis showed that the FAS -670 A/G polymorphism was associated with the risk of autoimmune diseases (GG vs. GA: OR=1.079, 95% CI=1.004-1.160, P=0.038), especially in Caucasians (GG vs. GA: OR=1.12, 95% CI=1.03-1.23, P=0.012), Asians (G vs. A: OR=0.89, 95% CI=0.83-0.96, P=0.002), systemic lupus erythematosus (SLE) (G vs. A: OR=0.85, 95% CI=0.77-0.94, P=0.001), multiple sclerosis (MS) (GG+GA vs. AA: OR=0.83, 95% CI=0.70-0.99, P=0.043), systemic sclerosis (SSc) (GG vs. GA: OR=1.20, 95% CI=1.07-1.36, P=0.003) and Hashimoto's thyroiditis (HT) (G vs. A: OR=1.45, 95% CI=1.10-1.90, P=0.008); the FAS -1377 G/A polymorphism was associated with the risk of autoimmune diseases (A vs. G: OR=1.11, 95% CI=1.03-1.20, P=0.008), especially in Asians (A vs. G: OR=1.15, 95% CI=1.05-1.25, P=0.002) and high quality studies (A vs. G: OR=1.14, 95% CI=1.05-1.24, P=0.002). 31840751 2020
Entrez Id: 1803
Gene Symbol: DPP4
DPP4
0.020 Biomarker disease BEFREE The expression of DPP4 and the number of DPP4 positive fibroblasts were increased in fibrotic skin of SSc patients in a TGF-β dependent manner. 31350829 2020
Entrez Id: 3603
Gene Symbol: IL16
IL16
0.020 AlteredExpression disease BEFREE IL-16 expression is increased in the skin and sera of patients with systemic sclerosis. 31377804 2020
Entrez Id: 641
Gene Symbol: BLM
BLM
0.020 Biomarker disease BEFREE Forty female BALB/c mice were randomly divided into a normal control (NC) group, SSc group (bleomycin [BLM]-induced experimental SSc), BLM + Thal (10 mg/kg/day) group, BLM + Thal (20) group, and BLM + Thal (30) group.Thal was administered a day after BLM. 31840939 2020
Entrez Id: 8654
Gene Symbol: PDE5A
PDE5A
0.020 GeneticVariation disease BEFREE <b>Objectives:</b> The usage of oral therapies, endothelin receptor antagonists (ERA), phosphodiesterase type-5 (PDE-5) inhibitors and prostaglandin analogues has resulted in improved outcomes in patients with pulmonary arterial hypertension related to systemic sclerosis (SSc-PAH). 31829087 2020
Entrez Id: 9863
Gene Symbol: MAGI2
MAGI2
0.010 Biomarker disease BEFREE SScAM occurred at a median [interquartile range (IQR)] time of 1 month [0-15] after SSc diagnosis. 31734403 2020
Entrez Id: 6370
Gene Symbol: CCL25
CCL25
0.010 Biomarker disease BEFREE CCR9 + T helper (Th) cells can induce Sjögren-like symptoms in mice and both CCR9 + Th cells and their ligand CCL25 are increased in the salivary glands of primary Sjögren's syndrome (pSS) patients. 31733111 2020
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.500 GeneticVariation disease GWASCAT Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases. 30573655 2019
Entrez Id: 6775
Gene Symbol: STAT4
STAT4
0.500 GeneticVariation disease GWASCAT GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways. 31672989 2019